Milad Eidi

Dedicated bioinformatics specialist with a passion for genetics, development and data analysis. Known for a meticulous approach to research and problem-solving, with a talent for developing practical tools and solutions. Highly collaborative and motivated, with strong communication skills and a commitment to advancing scientific knowledge.

✓2026/02

Comprehensive evaluation of ACMG/AMP-based variant classification tools

Tohid Ghasemnejad, Yuheng Liang, Khadijeh Hoda Jahanian, Milad Eidi, Arash Salmaninejad, Seyedeh Sedigheh Abedini, Fabrizzio Horta, Nigel H Lovell, Thantrira Porntaveetus, Mark Grosser, Mahmoud Aarabi, Hamid Alinejad-Rokny

Role: Analysis of VCF datasets in this study

Bioinformatics, Volume 42, Issue 2, February 2026 (IF:5.4)

✓2025/09
IMGT® at scale: FAIR, dynamic, and automated tools for immune locus analysis
Gaoussou Sanou, Guilhem Zeitoun, Taciana Manso, Milad Eidi, Shamsa Batool, Anjana Kushwaha, François Grand, Myriam Croze,…
Role: Implementation of reference adjustment functionality in IMGT/V-QUEST
Nucleic Acids Research, 2025 (IF:13.1)
✓ 2025/03
Comprehensive identification of hub mRNAs and lncRNAs in colorectal cancer using galaxy: an in silico transcriptome analysis
Mohsen Yari, Milad Eidi, Mohammad-Amin Omrani, Zahra Fazeli, Mohammad Rahmanian & Soudeh Ghafouri-Fard
Role: Data analysis and writing the manuscript
Discover Oncology (IF:2.9)

✓ 2024/02
123VCF: an intuitive and efficient tool for filtering VCF files
Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini, Masoud Garshasbi, Javad Zahiri
Latest version is available at SourceForge
Role: Idea, programming, and writing the manuscript
BMC Bioinformatics 25, 68 (2024) (IF:4.3)
✓ 2023/02
Isolation, characterization, therapeutic potency, and genomic analysis of a novel bacteriophage vB_KshKPC-M against carbapenemase-producing Klebsiella pneumoniae strains (CRKP) isolated from Ventilator-associated pneumoniae (VAP) infection of COVID-19 patients
GeneBank ID: ON489264.1
Mehrdad Mohammadi, Mahmood Safari, Seyed Davar Siadat, Seyed Hossein Hejazi, Mohammad Shayestehpour, Mitra Motallebi and Milad Eidi
Role: Phage assembly from FASTQ files
Annals of Clinical Microbiology and Antimicrobials (2023) 22:18 (IF: 6.7)
✓ 2020/12
Novel neuroclinical findings of autosomal recessive primary microcephaly 15 in a Consanguineous Iranian family
Ehsan Razmara, Homeyra Azimi, Ali Reza Tavasoli, Elnaz Fallahi, Sadaf Valeh Sheidae, Milad Eidi, Amirreza Bitaraf, Zahra Farjami, Mohammad Ali Daneshmand, Masoud Garshasbi
Role: Whole Exome data analysis
European Journal of Medical Genetics 63 (12), 104096 (IF: 2.7)
✓ 2020/01
Identification of RELN variant p. (Ser2486Gly) in an Iranian family with ankylosing spondylitis; the first association of RELN and AS
Masoud Garshasbi, Mahdi Mahmoudi, Ehsan Razmara, Mahdi Vojdanian, Saeed Aslani, Elham Farhadi, Lars Riff Jensen, Seyed Masoud Arzaghi, Shiva Poursani, Amirreza Bitaraf, Milad Eidi, Elika Esmaeilzadeh Gharehdaghi, Andreas Walter Kuss & Ahmadreza Jamshidi
Role: SOLID-NGS data analysis for 5 Whole Exome Sequencing cases
European Journal of Human Genetics 28 (6), 754-762 (IF: 5.3)
✓ 2019/06
A novel ISCA2 variant responsible for an early-onset neurodegenerative mitochondrial disorder: a case report of multiple mitochondrial dysfunctions syndrome 4
Milad Eidi, Masoud Garshasbi
Role: Whole Exome data analysis and writing entire the manuscript
BMC Neurology 19 (1), 1-7 (IF: 2.6)

• Bulk & Single Cell RNA seq analysis
• Whole Exome Sequencing analysis
• NGS-Based CNV data analysis
• Sanger sequencing master class